Guide to Expectation Maximization Algorithm

The expectation-maximization (EM) algorithm is used to estimate model parameters when some data is missing or hidden. It iteratively assigns probabilities to hidden variables and updates parameters to maximize the likelihood of the observed data.

Written by Max Reynolds
A robot reading a book. The expectation maximization algorithm is used to estimate the parameters of probabilistic models.
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UPDATED BY
Brennan Whitfield | Jul 11, 2025
Summary: The expectation-maximization (EM) algorithm is an iterative method used in machine learning and statistics to estimate parameters in probabilistic models with hidden variables. It alternates between expectation and maximization steps and is commonly applied in clustering and missing data problems.

The expectation-maximization (EM) algorithm is an iterative optimization algorithm commonly used in machine learning and statistics to estimate the parameters of probabilistic models, where some of the variables in the model are hidden or unobserved.

What Is an Expectation-Maximization Algorithm Used For?

The expectation-maximization algorithm is used throughout statistics applications in fields such as neuroscience when inferring hierarchical parameters of a Bayesian model. It is also useful for statistical modeling in computer vision, genetics, finance and a number of other fields.

The EM algorithm consists of two main steps: the expectation (E) step and the maximization (M) step.

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What Is the Expectation-Maximization Algorithm?

The expectation-maximization (EM) algorithm is a widely-used optimization algorithm in machine learning and statistics. Its goal is to maximize the expected complete-data log-likelihood, which helps estimate the parameters of probabilistic models where some variables are hidden or unobserved. This approach improves model accuracy by leveraging both observed data and inferred latent structure, even when direct likelihood maximization is intractable.

The EM algorithm is frequently used in clustering, where the assignment of data points to clusters is uncertain or ambiguous. The Gaussian mixture model (GMM) is one of the more popular clustering algorithms that uses the EM algorithm to estimate cluster parameters and assignments.

The EM algorithm is also useful for missing data estimation. The observed data is used to estimate the probability distribution of the missing data, and the algorithm iteratively estimates the missing values. The EM algorithm is also useful for estimating latent variable models like hidden Markov models or hierarchical Bayesian models.

 

Expectation-Maximization Algorithm Steps

The expectation-maximization algorithm has two main steps: expectation and maximization. It can also include a third step for initialization.

We’ll go over all three steps in the context of a Gaussian mixture model. Specifically, we assume that our data points belong to either of two Gaussian distributions:

1. Initialization

First is the initialization step. We randomly initialize the parameters of the Gaussian distributions: µ1, σ1, µ2, σ2.

Note: Initialization can affect convergence outcome (e.g. random, K-means++, etc.).

Graph of the initialization step for the EM algorithm
Image: Max Reynolds / Built In 

In this illustration, we have nine “missing” data points (z) in one-dimensional space that we believe belong to either of two distributions (red or green). We can do this calculation easily using the probability density functions of the Gaussians.

2. Expectation

Next is the expectation step. Here, we compute the posterior probability that each point belongs to each distribution. This is straightforward using the probability density function:

In our case, we plug in one of our points z1 for x, and we use either model’s parameters: µ1 or µ2 and σ1 or σ2 to get relative probabilities that z1 belongs to either of the two distributions. Then, we compute the posterior responsibilities (or soft assignments) using Bayes’ Theorem for the class probability.

For example, our updated probability that z1 in the first distribution is:

We repeat this process for each data point, resulting in a probability distribution over the two clusters for each point — these are the responsibilities used in the next step.

Here is what the probabilities for belonging to the first distribution might look like:

Graph of expectation step for EM algorithm
Image: Max Reynolds / Built In 

3. Maximization

Next is the maximization step. Here we update the parameters of the model to maximize the expected log-likelihood, given the responsibilities we just gave our unknown data points.

For the new µ1, we compute the weighted mean of the data points, where weights are the posterior probabilities of each point belonging to a given Gaussian distribution.

So our new µis:

Here, r1 is the probability that z1 belongs to the first (red) distribution. Remember, this was computed in Step 2. The new σ1 is similar, we just take the weighted-average squared distance of the points from our new mean. 

We do the same thing for µ2 and σ2. Our updated distributions might now look something like this:

Graph of maximization step for EM algorithm
Image: Max Reynolds / Built In 

Now, all we do is repeat the expectation and maximization steps until convergence.

Convergence refers to the point at which the algorithm stops iterating because further updates no longer significantly improve the model. In other words, the algorithm has reached a stable solution where the estimated parameters or the log-likelihood of the data no longer change meaningfully between iterations. Convergence in the EM algorithm is typically determined by monitoring how much the model’s parameters or the log-likelihood improve from one iteration to the next. 

And that’s the EM algorithm!

 

Limitations of the Expectation-Maximization Algorithm

Although the EM algorithm is a powerful statistical tool, it has some limitations.

Doesn’t Always Converge to Global Maximum Likelihood Estimates

One of the main limitations is that it can get stuck in local optima. This means that the algorithm may not always converge to the global maximum likelihood estimates of the parameters.

Assumes Data Is From a Specific Statistical Model

Another limitation is that the algorithm assumes that the data is generated from a specific statistical model, which may not always be the case. For example, we may or may not actually have two Gaussian distributions generating our data but the EM algorithm of course relies on this assumption.

Slow for Large or Complex Data Sets and Models

Finally, the algorithm can be slow for larger data sets and more complicated models.

Frequently Asked Questions

The expectation-maximization (EM) algorithm is an iterative method used in machine learning and statistics to estimate the parameters of probabilistic models with hidden or unobserved variables.

The expectation-maximization (EM) algorithm consists of two main steps:

  1. Expectation (E): Computes probabilities for hidden variables
  2. Maximization (M): Updates model parameters to maximize likelihood

The expectation-maximization algorithm is commonly used in clustering algorithms like Gaussian mixture models, where it estimates the probability that each data point belongs to a given cluster.

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