Associate Director, Automation Engineering

Posted 2 Days Ago
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Boston, MA, USA
In-Office
166K-249K Annually
Senior level
Biotech • Pharmaceutical
The Role
Leads an interdisciplinary automation engineering team developing, deploying, qualifying, and improving automated manufacturing equipment for cell and genetic therapies. Oversees mechanical, electrical, controls, robotics, vision, vendor, commissioning, validation, technology transfer, troubleshooting, and equipment strategy activities. Partners with manufacturing, quality, and vendors to integrate systems, manage documentation, support investigations, and deliver projects on schedule and within budget. The role requires strong regulatory, technical, leadership, and project management expertise.
Summary Generated by Built In

Job Description

General Summary:


Vertex’s Automation of Machinery and Processes (AMP) Team is seeking a high-impact leader to develop cutting-edge manufacturing solutions for its Cell & Genetic Therapies programs. This pivotal role is at the forefront of automating complex processes in one of the most dynamic and rapidly evolving fields in biotechnology. You will work with a passionate team of engineers, scientists, and innovators united by a shared mission: to push the boundaries of what’s possible in Cell & Genetic Therapy. This critical position will lead an interdisciplinary engineering team in novel equipment & systems development, vendor selection, equipment qualification, technology transfer, and continuous improvement to deliver robust and reliable manufacturing systems.


Key Duties and Responsibilities:


  • Lead a team of equipment and automation engineers involved in the design, development, deployment, and qualification of custom automation equipment and operation technology systems used for the development and manufacture of cell and genetic therapies.
  • Lead Equipment, System, and Automaton Projects from concept through execution in a dynamic development environment. Ensures user requirements are clearly defined and translated into achievable and testable engineering requirements.
  • Manage and execute the development of mechanical, electrical, and controls systems for capital equipment. Define automation execution strategy from concept feasibility through commercial deployment. Present to senior leadership as required.
  • Responsible for active oversight of the equipment / system design and commissioning process. Collaborate with vendors to produce prototype and production parts. Perform engineering analyses and relevant physical testing on designs.
  • Utilize operations simulation tools to identify and quantify automation opportunities.
  • Ensures seamless integration of automation control systems into existing enterprise systems.
  • Provide hands-on troubleshooting assistance to manufacturing in support of a rapid development cycle and manufacturing sustainability.
  • Collaborates with manufacturing engineering to define, manage, and continuously improve equipment performance, preventative maintenance plans, and spare parts lists/inventory.
  • Evaluate and recommend automation upgrades to existing equipment or systems. Prioritize projects and assign resources to complete projects on-time and within budget.
  • Review and/or draft Equipment Drawings, Electrical Diagrams, System Manuals, Engineering Protocols and Reports, Validation Documentation, and other Quality System Documentation.
  • Develop departmental procedures for development and documentation of automated systems, from specifications through operational procedures.
  • Support Deviation Management, CAPA, and Change Control activities, as required. Serve as Automation SME to Quality, Manufacturing, and other Functions. Support manufacturing investigations, including OOSs, OOTs, RCAs, etc.
  • Execute assigned duties on time and within budget; proactively telegraph delays and other issues to relevant stakeholders.
  • Comply with all regulatory, corporate, and Quality System policies and complete other projects and/or assignments as required.

Knowledge and Skills:


  • High degree of electromechanical aptitude with prior experience in designing and implementing automated precision manufacturing equipment, including integration of vision systems and robotics, in bioprocessing, medical device, pharmaceutical, automotive, semiconductor, or diagnostic systems.
  • Ability to organize and grow a team through organizational change and personnel development.
  • Experience with automation and equipment business case definition, vendor selection and management, automation and equipment design, development, commissioning, and validation. Experience developing and executing equipment strategy from concept to deployment.
  • Experience working with a variety of automation hardware, software and applications including, but not limited to, custom-fabricated mechanical components and mechanisms, single-use bioreactors and bioprocessing instruments, vision systems, robotics, AMR and AGV, control systems (PLC, DeltaV, PC), AI-enabled systems, and related control system components, pneumatics, automated process instrumentation.
  • Proficiency in AI tools and applications with experience developing for lab and manufacturing applications.
  • Experience qualifying/validating/deploying manufacturing equipment and processes is required. Knowledge and experience in utilizing risk-based approaches to validation process development and validation are highly advantageous.
  • Familiarity with ISO 13485, ISO 14971, 21 CFR 820, 21 CFR 211, and ICH Q7/8/9. Knowledge of global GMP requirements governing device or combination products.
  • Familiarity with equipment safety standards and regulations including OSHA 19 CFR 1910, NFPA 70, NFPA 79, ISO 18849-1.
  • Strong interpersonal, project management, technical writing and presentation skills required.
  • Sense of urgency, ability to act/escalate promptly, and transparently communicate issues to involved stakeholders and management.
  • Must be able to work independently with minimal supervision, multi-task, and support several projects simultaneously.
  • Knowledge of business applications such as MS Office, Veeva, Coupa.
  • Must demonstrate strong interpersonal, presentation, and teamwork skills.

Education and Experience:

  • PhD in mechanical engineering, electrical engineering, automation engineering or related field and 5 years experience in life sciences, manufacturing, or engineering, or
  • Master's Degree in mechanical engineering, electrical engineering, automation engineering or related field and 6 years experience in life sciences, manufacturing, or engineering, or
  • Bachelor's Degree in mechanical engineering, electrical engineering, automation engineering or related field and 8 years experience in life sciences, manufacturing, engineering

10-15% domestic & international travel is expected.


At Vertex, we embrace continuous learning and encourage employees to stay informed on advances in AI, technology, automation, and industry trends. We seek talent who bring an external perspective, demonstrate curiosity and sound judgment, and thoughtfully adopt new capabilities that improve decision-making, drive innovation, increase efficiency, and help deliver better outcomes for patients.

Pay Range:

$166,000 - $249,000

Disclosure Statement:

The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.

At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations.  From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.

Flex Designation:

On-Site Designated

Flex Eligibility Status:

In this On-Site designated role, you will work five days per week on-site with ad hoc flexibility.  

Note: The Flex status for this position is subject to Vertex’s Policy on Flex @ Vertex Program and may be changed at any time.

#LI-Onsite

Company Information

Vertex is a global biotechnology company that invests in scientific innovation.

Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.

Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at [email protected]

Skills Required

  • PhD in chemical engineering, computer science, automation engineering, or related field plus 5 years of experience in life sciences, manufacturing, or engineering
  • Master’s degree in chemical engineering, computer science, automation engineering, or related field plus 6 years of experience in life sciences, manufacturing, or engineering
  • Bachelor’s degree in chemical engineering, computer science, automation engineering, or related field plus 8 years of experience in life sciences, manufacturing, or engineering
  • Experience designing and implementing automated precision manufacturing equipment with vision systems and robotics
  • Experience with automation and equipment business cases, vendor selection and management, design, development, commissioning, and validation
  • Experience developing and executing equipment strategy from concept through deployment
  • Experience with automation hardware, software, control systems, robotics, vision systems, AMR, AGV, AI-enabled systems, pneumatics, and process instrumentation
  • Proficiency in AI tools and applications for laboratory and manufacturing environments
  • Experience qualifying, validating, and deploying manufacturing equipment and processes
  • Strong electromechanical aptitude
  • Strong interpersonal, project management, technical writing, presentation, and teamwork skills
  • Ability to lead, organize, and develop an engineering team through organizational change
  • Ability to work independently, multitask, support multiple projects, and escalate issues promptly
  • Knowledge of ISO 13485, ISO 14971, 21 CFR 820, 21 CFR 211, ICH Q7, ICH Q8, and ICH Q9
  • Knowledge of global GMP requirements for device or combination products
  • Familiarity with equipment safety standards including OSHA 1910, NFPA 70, NFPA 79, and ISO 18849-1
  • Knowledge of Microsoft Office, Veeva, and Coupa

Vertex Pharmaceuticals Compensation & Benefits Highlights

The following summarizes recurring compensation and benefits themes identified from responses generated by popular LLMs to common candidate questions about Vertex Pharmaceuticals and has not been reviewed or approved by Vertex Pharmaceuticals.

  • Parental & Family Support — Policies provide 12 weeks of 100% paid bonding leave for all U.S. parents with additional fully paid time for birth parents. Family-forming supports include adoption and surrogacy assistance, fertility options like IVF and egg cryopreservation, breast‑milk shipping, subsidized childcare, backup care, and a DCFSA match.
  • Leave & Time Off Breadth — Time off includes roughly four weeks of vacation, 13 holidays, sick time, and two companywide shutdowns (summer and year‑end). Some roles also include flexible or unlimited time off and paid volunteer time.
  • Retirement Support — Programs include a 401(k) plan with employer contributions and an employee stock purchase plan. Filings describe employer contributions occurring in company stock, supporting long‑term ownership.

Vertex Pharmaceuticals Insights

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The Company
HQ: Boston, MA
5,000 Employees
Year Founded: 1989

What We Do

Vertex is a global biotechnology company that invests in scientific innovation to create transformative medicines for people with serious and life-threatening diseases. We discovered and developed the first medicines to treat the underlying cause of cystic fibrosis (CF), a rare, life-threatening genetic disease. In addition to clinical development programs in CF, Vertex has more than a dozen ongoing research programs focused on the underlying mechanisms of other serious diseases. Founded in 1989 in Cambridge, Massachusetts, our corporate headquarters is now located in Boston’s Innovation District, and our international headquarters is in London, United Kingdom. We currently employ approximately 3,500 people in the United States, Europe, Canada, Australia and Latin America with nearly two-thirds of our staff dedicated to research and development. Vertex is consistently recognized as one of the industry’s top places to work by Science Magazine, The Boston Globe, Boston Business Journal and the San Diego Business Journal. Our research and medicines have also received esteemed recognitions, including the Robert J. Beall Therapeutics Development Award, the French Prix Galien and the British Pharmacological Society awards.

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