Job Description
Vertex Pharmaceuticals is seeking a highly motivated and innovative scientist to join our Predictive and Investigative Safety Assessment (Toxicology) group in San Diego as a Research Scientist. This lab-based role offers an exciting opportunity to lead the development of advanced 3D organoid models, organ-on-a-chip technologies, and fit-for-purpose assays to investigate toxicological mechanisms and support our therapeutic discovery and development efforts. The successful candidate will have a proven track record of working with complex in vitro models, including primary cells and immune cells in 3D formats or co-culture systems, and will bring expertise in developing and applying innovative approaches to assess molecular toxicities. The ideal candidate will have a strong background in cellular biology, toxicology, and advanced in vitro model systems, with demonstrated experience in tissue engineering and assay optimization. Experience with immune cell co-culture models, primary cell systems, and high-throughput plate formats is highly desirable.
Key Duties and Responsibilities:
- Design and develop fit-for-purpose assays to investigate toxicological mechanisms using advanced 3D organoid models, organ-on-a-chip technologies, and/or co-culture systems.
- Lead the development and application of innovative platforms for studying toxicology in multicellular systems, including immune cell interactions and primary cell-based models.
- Develop and optimize assays to evaluate toxicological mechanisms, with a focus on precision, reproducibility, and scalability.
- Collaborate with cross-functional teams to integrate advanced in vitro models into drug discovery workflows, supporting safety assessment and therapeutic development.
- Apply cutting-edge technologies, including automation and high-throughput plate formats, to enhance assay performance and throughput.
- Partner with Systems Toxicology to generate and analyze complex biological datasets from in vitro models, enabling the identification of toxicological mechanisms and establishing in vitro-in vivo correlations.
- Effectively communicate scientific findings, project progress, and key insights in project team meetings, department meetings, and discussions with key stakeholders to drive decision-making and inform strategic goals.
Knowledge and Skills:
- Familiarity with omics datasets (transcriptomics, proteomics, secretomics, etc.).
- Experience with scripting (Python and/or R/Bioconductor).
- Demonstrated ability to work effectively in cross-functional teams and collaborate across disciplines.
- Self-motivated, organized, and innovative, with excellent communication and presentation skills.
- Proven ability to troubleshoot and solve complex biological and technical challenges in a fast-paced, dynamic environment.
- A passion for advancing toxicology research to improve drug safety and transform the lives of patients.
Education and Experience:
- Ph.D. (or equivalent degree) in toxicology, cellular biology, immunology, biochemistry, biophysics, or related disciplines with 0-3 years of relevant postdoctoral employment experience, or a Masters degree and 3+ years of experience or a Bachelors degree and 6+ years of experience
- Strong expertise in developing and working with 3D organoid models, organ-on-a-chip technologies, and/or co-culture systems, particularly involving primary epithelial cells and immune cells.
- Proven experience in designing and optimizing cell-based assays for disease modeling and/or evaluating mechanisms of toxicity.
- Expertise in immune cell biology and co-culture models for studying immune-mediated toxicities.
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Pay Range:
$101,600 - $152,400Disclosure Statement:
The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.
At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations. From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.
Flex Designation:
On-Site DesignatedFlex Eligibility Status:
In this On-Site designated role, you will work five days per week on-site with ad hoc flexibility.
Note: The Flex status for this position is subject to Vertex’s Policy on Flex @ Vertex Program and may be changed at any time.
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Company Information
Vertex is a global biotechnology company that invests in scientific innovation.
Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.
Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at [email protected]
Skills Required
- Ph.D. in toxicology, cellular biology, immunology, biochemistry, biophysics, or related field OR Masters with 3+ years OR Bachelors with 6+ years
- Strong expertise developing and working with 3D organoid models, organ-on-a-chip technologies, and/or co-culture systems
- Proven experience designing and optimizing cell-based assays for disease modeling or evaluating mechanisms of toxicity
- Expertise in immune cell biology and immune cell co-culture models for studying immune-mediated toxicities
- Familiarity with omics datasets (transcriptomics, proteomics, secretomics)
- Experience with scripting in Python and/or R and using Bioconductor
- Experience applying automation and high-throughput plate formats (desirable for scalability)
- Proven ability to troubleshoot complex biological and technical challenges and communicate results effectively
Vertex Pharmaceuticals Compensation & Benefits Highlights
The following summarizes recurring compensation and benefits themes identified from responses generated by popular LLMs to common candidate questions about Vertex Pharmaceuticals and has not been reviewed or approved by Vertex Pharmaceuticals.
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Parental & Family Support — Policies provide 12 weeks of 100% paid bonding leave for all U.S. parents with additional fully paid time for birth parents. Family-forming supports include adoption and surrogacy assistance, fertility options like IVF and egg cryopreservation, breast‑milk shipping, subsidized childcare, backup care, and a DCFSA match.
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Leave & Time Off Breadth — Time off includes roughly four weeks of vacation, 13 holidays, sick time, and two companywide shutdowns (summer and year‑end). Some roles also include flexible or unlimited time off and paid volunteer time.
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Retirement Support — Programs include a 401(k) plan with employer contributions and an employee stock purchase plan. Filings describe employer contributions occurring in company stock, supporting long‑term ownership.
Vertex Pharmaceuticals Insights
What We Do
Vertex is a global biotechnology company that invests in scientific innovation to create transformative medicines for people with serious and life-threatening diseases. We discovered and developed the first medicines to treat the underlying cause of cystic fibrosis (CF), a rare, life-threatening genetic disease. In addition to clinical development programs in CF, Vertex has more than a dozen ongoing research programs focused on the underlying mechanisms of other serious diseases. Founded in 1989 in Cambridge, Massachusetts, our corporate headquarters is now located in Boston’s Innovation District, and our international headquarters is in London, United Kingdom. We currently employ approximately 3,500 people in the United States, Europe, Canada, Australia and Latin America with nearly two-thirds of our staff dedicated to research and development. Vertex is consistently recognized as one of the industry’s top places to work by Science Magazine, The Boston Globe, Boston Business Journal and the San Diego Business Journal. Our research and medicines have also received esteemed recognitions, including the Robert J. Beall Therapeutics Development Award, the French Prix Galien and the British Pharmacological Society awards.







