About the Job
The Software Engineer III on the Data Engineering Team is broadly responsible for building and supporting software applications in use by the business; in particular, FoundationCORE and its components. The technical products developed by the incumbent help doctors match patients to more advanced treatment options. This role completes design, development, unit testing, code reviews, and generates technical documentation. The Software Engineer III has a high-level understanding of the codebase and is self-sufficient in at least one domain of FMI architecture. The incumbent makes well-reasoned decisions and trade-offs, is able to work in other parts of the codebase with guidance and, as an experienced practitioner, provides guidance to lower level Software Engineers.
Key Responsibilities
- Help to design, develop, and maintain a robust and scalable data platform.
- Write high quality distributed system software.
- Build batch and streaming pipelines for the analysis of FMI’s data assets.
- Partner with other team members to:
- Investigate design approaches;
- Prototype new technologies; and,
- Evaluate technical feasibility.
- Implement algorithms developed by FMI data scientists.
- Identify, design, and implement internal process improvements including, but not limited to, automating manual processes, optimizing data delivery and redesigning infrastructure for greater scalability.
- Deliver contributions in an Agile approach and leveraging Agile methodology.
- Other duties as assigned.
Qualifications:
Basic Qualifications:
- Bachelor’s Degree and 3+ year(s) of software engineering experience
- Proficiency in one of the following software languages: Java, Scala, Python, or Go
Preferred Qualifications:
- Bachelor’s Degree in Computer Science, Software Engineering, or a related concentration
- 6+ years of prior software engineering experience
- Deep professional experience with:
- Data pipeline and workflow management tools: Airflow, Glue, Azkaban, DBT, Prefect, Dagster and others
- SQL query tuning
- Java, Spring Boot
- Data processing tools Spark, Storm, Hadoop, Heron, and others
- Amazon Web Services (AWS) or similar cloud platform
- Object-oriented programming (OOP) and functional programming (FP) paradigms
- Distributed event streaming systems: Kafka, Pulsar, Kinesis, SQS and others
- Profiling applications and JVM tuning
- Relational databases
- Object-Relational Mapping (ORM)
- Prior life science industry experience, particularly in genomics or biotechnology industry experience
- Demonstrated understanding of Agile software delivery
- Professional experience developing software in a distributed computing environment
- Familiarity with both object oriented (OO) and functional programming (FP) paradigms
- Strong refactoring abilities and test automation skills
- Familiarity with:
- Containerization/containerized deployment of software: Docker, Kubernetes, and others
- NoSQL database technologies such as document stores and graph databases
- Experience building and delivering Continuous Integration/Continuous Deployment (CI/CD) solutions
- Lifelong learner mindset, passionate about software development
- Strong interpersonal skills including successful collaboration and problem solving with other departments and colleagues
- Excellent organization and attention to detail
- Ability to work well under pressure while maintaining a professional demeanor
- Ability to prioritize and thoroughly follow up on assigned tasks
- Ability to adapt to changing procedures, policies and work environment
- Understanding of HIPAA and importance of privacy of patient data
- Commitment to reflect FMI’s values: Integrity, Courage, and Passion
The expected salary range for this position based on the primary location of Boston, MA is $128,400 - $160,500 per year. The salary range is commensurate with Foundation Medicine’s compensation practice and considers factors including, but not limited to, education, training, experience, external market conditions, criticality of role, and internal equity. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for Foundation Medicine's benefits.
#LI-Hybrid
About UsSkills Required
- Bachelor's Degree
- 3+ years of software engineering experience
- Proficiency in one of: Java, Scala, Python, or Go
- 6+ years prior software engineering experience
- Experience with data pipeline and workflow tools (Airflow, Glue, Azkaban, DBT, Prefect, Dagster)
- SQL query tuning and relational database experience
- Experience with Java and Spring Boot
- Experience with data processing tools (Spark, Storm, Hadoop, Heron)
- Experience with cloud platforms (AWS or similar)
- Experience with distributed event streaming systems (Kafka, Pulsar, Kinesis, SQS)
- Profiling applications and JVM tuning
- Experience with ORM and object-relational mapping
- Experience in distributed computing environments and CI/CD solutions
- Familiarity with containerization and orchestration (Docker, Kubernetes)
- Familiarity with NoSQL databases (document stores, graph databases)
- Understanding of HIPAA and patient data privacy
- Prior life sciences or genomics/biotech industry experience
- Demonstrated understanding of Agile software delivery
Foundation Medicine Compensation & Benefits Highlights
The following summarizes recurring compensation and benefits themes identified from responses generated by popular LLMs to common candidate questions about Foundation Medicine and has not been reviewed or approved by Foundation Medicine.
-
Strong & Reliable Incentives — Bonuses and long-term incentives are described as competitive and a meaningful component of total rewards. Annual bonuses tied to personal and company outcomes feature alongside base pay.
-
Healthcare Strength — Comprehensive medical and dental coverage is a core element of the package. Health plans are positioned as robust and well-rounded rather than minimal.
-
Leave & Time Off Breadth — Time-off offerings include flexible or unlimited PTO and paid parental leave, supporting work–life balance. Extra paid downtime has been referenced alongside standard PTO.
Foundation Medicine Insights
What We Do
Foundation Medicine is a molecular information company dedicated to a transformation in cancer care in which treatment is informed by a deep understanding of the genomic changes that contribute to each patient's unique cancer. The company offers a full suite of comprehensive genomic profiling assays to identify the molecular alterations in a patient’s cancer and match them with relevant targeted therapies, immunotherapies and clinical trials. Foundation Medicine’s molecular information platform aims to improve day-to-day care for patients by serving the needs of clinicians, academic researchers and drug developers to help advance the science of molecular medicine in cancer. For more information, please visit us at www.FoundationMedicine.com or follow @FoundationATCG on Twitter. Community Guidelines: bit.ly/FMICommunityGuidelines







