Scientist III, Bioinformatics (CDx NGS)

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Carlsbad, CA, USA
In-Office
100K-135K Annually
Biotech
Our Mission is to enable our customers to make the world healthier, cleaner and safer.
The Role

Work Schedule

Standard (Mon-Fri)

Environmental Conditions

Office

Job Description

Work Schedule

Standard (Mon-Fri)

Environmental Conditions

Office

Do you have a passion for innovative ideas and groundbreaking discoveries? With over $1 billion invested annually in R&D, at Thermo Fisher Scientific you’ll help solve some of the world’s toughest challenges, from giving cancer patients hope, ensuring safe drinking water, and helping law enforcement tackle cases through forensics. We empower our teams to put science into meaningful action and give our R&D colleagues the autonomy, resources, and tools they need to take science a step beyond.

Discover Impactful Work:

As a Scientist III, Bioinformatics, you will support the development and implementation of Next Generation Sequencing (NGS) based oncology assays within the Clinical Sequencing Division. Apply your expertise in oncology bioinformatics, Python programming, and Unix/Linux systems to develop and maintain bioinformatics pipelines, analyze complex genomic data, and ensure compliance with regulatory standards. Your work will directly contribute to advancing precision medicine and improving patient outcomes.

A day in the Life:

  • Pipeline Development and Maintenance: Develop, optimize, and maintain bioinformatics pipelines and tools using Python and other relevant scripting languages on linux based platforms.
  • Data Analysis: Perform data analysis and interpretation of high-throughput sequencing data, including but not limited to DNA, RNA, cell free total nucleic acid datasets.
  • Collaboration: Work closely with cross-functional teams, including laboratory scientists, clinical researchers, regulatory professionals, and software developers, to design and implement bioinformatics solutions that meet project requirements.
  • Troubleshooting: Troubleshoot and resolve technical issues related to data processing and analysis, ensuring timely and accurate results.
  • Quality Control: Ensure data integrity, quality control, and compliance with regulatory standards throughout the development process.
  • Documentation: Ensure workflows, pipelines, and analysis results are clearly and reproducibly detailed, following standard methodologies in scientific research.
  • Continuous Learning: Stay up-to-date with the latest developments in bioinformatics, genomics, and computational biology, and apply this knowledge to improve existing pipelines and develop new solutions.

Keys to Success:

Education

  • Ph.D. or Master’s degree in Bioinformatics, Computational Biology, Molecular Biology, or a related field preferred.
  • Bachelor's degree with minimum 5 years of related experience required.

Experience

  • Demonstrated ability in bioinformatics, with a focus on oncology and Next Generation Sequencing (NGS) required.
  • Proven experience in Python programming, bash scripting, Unix/Linux systems, next generation sequencing analysis, and somatic oncology genomics
  • Strong understanding of bioinformatics tools and algorithms, including sequence alignment, variant calling, and functional annotation.
  • Experience with high-throughput sequencing data analysis (e.g., NGS, RNA-Seq, WGS, etc.).
  • Familiarity with version control systems (e.g., Github)
  • Experience working in regulated environments and familiarity with regulatory compliance and quality assurance standards.

Knowledge, Skills, Abilities

  • Outstanding problem-solving skills and attention to detail.
  • Strong communication and collaboration skills, with the ability to work effectively in a multidisciplinary team.
  • Excellent documentation skills, with the ability to write clear and reproducible workflows.
  • Familiarity with cloud data platforms (e.g., AWS) and containerization technologies (e.g., Docker) is a plus.
  • Knowledge of statistical analysis and machine learning techniques is a plus.
  • Familiarity with databases and data management systems (e.g., SQL, NoSQL) is a plus.

We offer competitive remuneration, annual incentive plan bonus, healthcare, and a range of employee benefits. Thermo Fisher Scientific offers employment with an innovative, forward-thinking organization, and outstanding career and development prospects. We offer an exciting company culture that stands for integrity, intensity, involvement, and innovation!

Apply today! http://jobs.thermofisher.com

Compensation and Benefits

The salary range estimated for this position based in California is $100,000.00–$135,000.00.

This position may also be eligible to receive a variable annual bonus based on company, team, and/or individual performance results in accordance with company policy. We offer a comprehensive Total Rewards package that our U.S. colleagues and their families can count on, which includes:

  • A choice of national medical and dental plans, and a national vision plan, including health incentive programs

  • Employee assistance and family support programs, including commuter benefits and tuition reimbursement

  • At least 120 hours paid time off (PTO), 10 paid holidays annually, paid parental leave (3 weeks for bonding and 8 weeks for caregiver leave), accident and life insurance, and short- and long-term disability in accordance with company policy

  • Retirement and savings programs, such as our competitive 401(k) U.S. retirement savings plan

  • Employees’ Stock Purchase Plan (ESPP) offers eligible colleagues the opportunity to purchase company stock at a discount

For more information on our benefits, please visit: https://jobs.thermofisher.com/global/en/total-rewards

Thermo Fisher Scientific Compensation & Benefits Highlights

The following summarizes recurring compensation and benefits themes identified from responses generated by popular LLMs to common candidate questions about Thermo Fisher Scientific and has not been reviewed or approved by Thermo Fisher Scientific.

  • Retirement Support Retirement programs include a strong company 401(k) match and an employee stock purchase plan that add meaningful long‑term value. Feedback suggests these features stand out among core financial benefits even when base pay feels average.
  • Healthcare Strength Health coverage offers multiple national medical options alongside dental and vision, with company‑paid life and disability coverage. This breadth is considered a solid foundation even if some costs may not be the lowest among peers.
  • Parental & Family Support Paid parental and caregiver leave, backup care, adoption assistance, and specialized family resources are available. Feedback suggests these supports are a notable plus for colleagues managing family and caregiving needs.

Thermo Fisher Scientific Insights

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The Company
HQ: Waltham, MA
100,000 Employees

What We Do

Thermo Fisher Scientific Inc. is the world leader in serving science, with annual revenue of approximately $40 billion. Our Mission is to enable our customers to make the world healthier, cleaner and safer. Whether our customers are accelerating life sciences research, solving complex analytical challenges, increasing productivity in their laboratories, improving patient health through diagnostics or the development and manufacture of life-changing therapies, we are here to support them. Our global team delivers an unrivaled combination of innovative technologies, purchasing convenience and pharmaceutical services through our industry-leading brands, including Thermo Scientific, Applied Biosystems, Invitrogen, Fisher Scientific, Unity Lab Services, Patheon and PPD.

Why Work With Us

You will join a company which every colleague has the opportunity to create possibilities, for oneself, for our customers and patients. There is no more exciting place to be than at the forefront of solving problems which help improve lives around the world. As a company, we are committed to supporting your career aspirations and your journey.

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