Scientist I – Brain Proteome Organization
The mission of the Allen Institute is to understand the principles that govern life and to advance health. Our creative and multi-dimensional teams focus on answering some of the biggest questions in bioscience. We accelerate foundational research, catalyze bold ideas, develop tools and models, and openly share our science to make a broad, transformational impact on the world.
The mission of the Allen Institute for Brain Science is to accelerate the understanding of how the human brain works in health and disease. Using a big science approach, we generate useful public resources, drive technological and analytical advances, and discover fundamental brain properties through the integration of experiments, modeling, and theory.
We are seeking a Scientist I to join a research team focused on understanding how the proteome of neuronal populations and their synapses shapes brain circuit function. The team develops scalable synapse proteomics and systems-level analysis to understand how the proteome and protein interactions determine synapse-type specific physiology and circuit connectivity.
The candidate will focus on developing and applying scalable approaches for synapse proteomics to reveal principles of synaptic molecular organization. In addition to working within the research team, the candidate will collaborate closely with teams and core facilities across the Allen Institute that support large-scale experimental and computational neuroscience. We welcome candidates from diverse scientific backgrounds, who may bring their own questions and expertise into the field.
At the Allen Institute, we believe that science is for everyone – and should be open to everyone. We are dedicated to combating biases and reducing barriers to STEM careers more broadly.
We also believe that science is better when it includes different perspectives and voices. We strive to make the Allen Institute a place where everyone feels like they belong and are empowered to do their best work in a supportive environment.
We are an equal-opportunity employer and strongly encourage people from all backgrounds to apply for our open positions.
Essential Functions
- Lead projects focused on understanding proteome organization across neuronal populations and synapse types in the brain
- Design and perform scalable synapse type-specific proteomics experiments
- Develop and apply next-generation workflows for synapse isolation and proteomic analysis
- Analyze and integrate large-scale proteomic datasets with multimodal structural and functional data
- Coordinate with internal teams and core facilities to acquire and process experimental data
- Develop and improve computational and statistical strategies for data production and processing
- Monitor and manage data acquisition, storage and deposition
- Publish and present findings in peer-reviewed journals and scientific conferences
- Execute collaborative projects within the team, across teams, and/or with external collaborators
*Note: Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions. This description reflects management’s assignment of essential functions; it does not proscribe or restrict the tasks that may be assigned.*
Required Education and Experience
- Ph.D. or equivalent degree in STEM (i.e. Neuroscience, Biology, or related field); or equivalent combination of degree and experience
- Proven strong publication record
- Experimental experience in lab-based research and molecular methods
- Experience in R and/or python
Preferred Education and Experience
- Experience in mass spectrometry-based proteomic workflows
- Experience with large-scale biological datasets and statistical analysis
- Broad understanding of the principles of the nervous system across scales from molecules to circuits
- Ability to work independently and within a collaborative, multi-disciplinary environment
- Positive attitude, self-starter, demonstrated attention to detail, and ability to troubleshoot
Work Environment
- Exposure to and handling of laboratory animals
- Laboratory environment - possible chemical, biological, or other hazardous substances exposure
- Possible exposure to BioSafety Level 2 organisms, such as recombinant viruses
Position Type/Expected Hours of Work
- Occasional evening and weekend hours required
- This role is currently working onsite and is expected to work onsite for the majority of working hours. The primary work location for this role is 615 Westlake Ave N., with the flexibility to work remotely on a limited basis
Travel
- Occasional travel to partner sites for compliance oversight required
- Attendance and participation in national and international conferences required
Additional Eligibility Qualifications
- All employees who work with live animals must complete an Occupational Health medical history form and/or consultation with an Occupational Health Provider and receive clearance to work with animals. Depending on your health history and job responsibilities, an annual respiratory health screening and clearance to use a respirator may also be required
Additional Comments
- Please note, this opportunity offers relocation assistance
- Please note, this opportunity may offer work visa sponsorship
Annualized Salary Range
$86,150 - $106,650*
* Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.
Benefits
- Employees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute’s Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute’s 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute’s benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits.
It is the policy of the Allen Institute to provide equal employment opportunity (EEO) to all persons regardless of age, color, national origin, citizenship status, physical or mental disability, race, religion, creed, gender, sex, sexual orientation, gender identity and/or expression, genetic information, marital status, status with regard to public assistance, veteran status, or any other characteristic protected by federal, state or local law. In addition, the Allen Institute will provide reasonable accommodations for qualified individuals with disabilities.
Skills Required
- Ph.D. or equivalent degree in STEM (Neuroscience, Biology, or related field) or equivalent combination of degree and experience
- Proven strong publication record
- Experimental experience in lab-based research and molecular methods
- Experience in R and/or Python
- Experience in mass spectrometry-based proteomic workflows
- Experience with large-scale biological datasets and statistical analysis
- Broad understanding of nervous system principles across molecular to circuit scales
- Ability to work independently and within a collaborative, multi-disciplinary environment
- Positive attitude, self-starter, attention to detail, and troubleshooting ability
What We Do
The Allen Institute is a 501(c)(3) nonprofit medical research organization dedicated to accelerating science for a healthier world. Through large-scale, multidisciplinary research initiatives, the Institute generates foundational knowledge, data, tools, and models that are shared openly with the world to advance our understanding of life and health, focusing on the brain, cells, and immune system to transform human health.









