Scientist I - AOC Bioconjugation

Posted 17 Days Ago
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San Diego, CA, USA
In-Office
128K-142K Annually
Junior
Healthtech • Biotech • Pharmaceutical
The Role
Conducts hands-on design, synthesis, purification, and characterization of antibody-oligonucleotide conjugates for RNA therapeutics. Develops conjugation, purification, linker, and analytical methods; supports CDMO technology transfer and process optimization. Collaborates with discovery, analytical, biology, and development teams to advance candidates toward IND-enabling studies. Maintains laboratory instruments, records compliant ELN data, reviews scientific literature, troubleshoots experiments, and presents findings to project teams.
Summary Generated by Built In

Atrium is a biopharmaceutical company pioneering delivery of RNA therapeutics to the heart to transform the standard of care for people living with cardiomyopathies. Our proprietary technology leverages the targeted RNA delivery platform initially designed at Avidity, which combines the tissue selectivity of mAbs and other targeted delivery ligands with the precision of oligonucleotides. 

This unique combination is designed to allow selective targeting of the underlying genetic drivers of disease that were previously undruggable. Through targeted, non-viral delivery of siRNA to cardiac tissues, our approach has the potential to overcome key limitations of nonspecific viral and nanoparticle-based delivery systems, including challenges related to tissue specificity, immunogenicity, and redosing.  

Position Overview: 

We are seeking a hands-on Scientist I to join our Integrated Discovery and Technical Development Team, focused on the design, synthesis, purification, characterization and scale-up of antibody-oligonucleotide conjugates (AOCs) that deliver siRNA payloads selectively to cardiomyocytes. This bench-based role suits a bioconjugation chemist who wants to help advance a differentiated RNA-delivery platform, working closely with Biology, Developmental Sciences, Analytical, and Technical Operations colleagues to advance candidate AOCs from discovery through IND-enabling studies. This role will also support late-stage development as needed. 

Responsibilities: 

  • Synthesize, purify, and characterize antibody-oligonucleotide conjugates (AOCs) in support of discovery and early development programs. 
  • Develop, optimize, and support CDMO tech transfer of conjugation and purification processes to improve throughput, reproducibility, and product quality.
  • Collaborate cross-functionally with discovery and development teams to advance AOCs through IND-enabling activities and support late-stage development.
  • Develop analytical methods to characterize the bioconjugation process intermediates and products, such as IEX, HIC, RP-HPLC, and LC-MS.
  • Design, synthesize, and evaluate linkers for conjugation efficiency, stability, and activity.
  • Stay current with literature relating to bioconjugation, oligonucleotide therapeutics, and emerging technologies for cardiomyocyte delivery.
  • Set up, maintain, and troubleshoot lab instruments to ensure continuous smooth operation.  
  • Maintain detailed, compliant records in an electronic lab notebook (ELN) and present data and conclusions at internal project team meetings. 

Education and Experience Requirements: 

  • Ph.D. in Chemistry, Chemical Biology, Biochemistry, or a related discipline, with 0–2 years of relevant postdoctoral or industry experience; or
  • M.S. in a related discipline with 3–6 years of relevant industry experience; or
  • B.S./B.A. in a related discipline with 6–9 years of relevant industry experience.
  • Hands-on experience with bioconjugation chemistry (e.g., antibody-drug conjugate, antibody-oligonucleotide conjugate, peptide conjugates or related biomolecule conjugation approaches).
  • Working knowledge of oligonucleotide chemistry and/or monoclonal antibody structure and handling.
  • Hands-on experience with protein/bioconjugate purification techniques (HIC, SEC, IEX, affinity, and/or mixed-mode chromatography and tangential flow filtration).
  • Proficiency with analytical characterization methods (HPLC-based methods, CE-SDS, icIEF, LC-MS, UV-Vis).
  • Experience with IND requirements and Common Technical Document structure is preferred
  • Strong record-keeping, problem-solving, and attention to detail.
  • Effective written and verbal communication skills, with the ability to present data cross-functionally.  

What We Provide:  

  • The base salary range for this role is $128,000-$142,000. The final compensation will be commensurate with such factors as relevant experience, skillset, internal equity and market factors.
  • Atrium offers competitive compensation and benefits which include stock options & RSUs, as well as a 401(k) with an employer match. In addition, the comprehensive wellness program includes coverage for medical, dental, vision, LTD, and unlimited of time off including summer & winter breaks.
  • A commitment to learning and development which includes a variety of programming internally developed by and for Atrium employees, opportunities for job-specific training offered by industry, and an education reimbursement program. 

Skills Required

  • Ph.D. in Chemistry, Chemical Biology, Biochemistry, or a related discipline with 0-2 years of relevant postdoctoral or industry experience
  • M.S. in a related discipline with 3-6 years of relevant industry experience
  • B.S. or B.A. in a related discipline with 6-9 years of relevant industry experience
  • Hands-on experience with bioconjugation chemistry, such as antibody-drug conjugates, antibody-oligonucleotide conjugates, peptide conjugates, or related biomolecule conjugation approaches
  • Working knowledge of oligonucleotide chemistry and/or monoclonal antibody structure and handling
  • Experience with protein or bioconjugate purification techniques, including HIC, SEC, IEX, affinity, and/or mixed-mode chromatography
  • Proficiency with analytical characterization methods, including HPLC-based methods, CE-SDS, icIEF, LC-MS, and UV-Vis
  • Strong record-keeping, problem-solving, and attention to detail
  • Effective written and verbal communication skills with the ability to present data cross-functionally
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The Company
47 Employees
Year Founded: 2026

What We Do

Atrium Therapeutics, Inc. is a San Diego-based biopharmaceutical company dedicated to pioneering the delivery of ribonucleic acid (RNA) therapeutics directly to the heart. By focusing on delivering precision RNA medicines to cardiac tissue, the company aims to transform the standard of care for patients living with rare, life-threatening genetic cardiomyopathies and advance the field of precision cardiology.

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