Senior Machine Learning Engineer (Clinical Team)

Posted 4 Days Ago
7 Locations
Remote or Hybrid
Senior level
Artificial Intelligence • Generative AI
The Role
Own and improve 2D, 3D, and fusion-based image segmentation models for clinical ultrasound and CT analysis. Build training, evaluation, dataset, and labeling pipelines; collaborate with clinicians, contractors, and data teams; and productionize auditable, low-latency inference services with confidence scoring, drift monitoring, and safe fallbacks. Work under medical-device design controls and support robust modeling across diverse patient anatomy and imaging conditions.
Summary Generated by Built In
What you’ll do
  1. Own the tissue-class segmentation and labeling models for the ultrasound CT clinical analysis layer, and the pipelines that make them trainable and verifiable.

  2. Retune across 2D per-slice, 3D volumetric, and 2D×3D fusion as reconstructed image inputs are continuously updated, and clinical indications for use expand.

  3. Define training/evaluation pipelines, datasets, and metrics from the ground up or from open source; map model behavior to user needs and design requirements.

  4. Work with data labeling contractors, expert clinicians, and our internal cloud/data teams on labeling specs, QC, and dataset versioning.

  5. Help productionize models into a versioned, HIPAA-bound analysis service: reproducible/low-latency inference, per-prediction confidence, drift monitoring, and safe fallbacks.

What we’re looking for
  • Strong applied ML experience with a track record of developing new models — architecting, training, and evaluating from scratch as well as benchmarking against existing models.

  • Experience with image segmentation (semantic/instance, 2D and ideally 3D/volumetric) and the modeling and training-data choices that make it robust across diverse patient anatomy.

  • Comfortable moving fluidly between open-ended research iteration and producing quantifiable, testable models.

  • Fluent in modern deep-learning tooling (e.g., PyTorch) and current development practices.

  • Comfortable working under design controls, where model changes carry documentation and verification weight.

Useful experience
  • Image segmentation and label generation with modern architectures (U-Net / nnU-Net, 3D U-Net, transformer-based and promptable segmentation like SAM), including the geometry that ties voxel- and mesh-level predictions back to a coordinate frame.

  • Learning under limited or noisy supervision: self-supervised / semi-supervised methods (masked autoencoders, contrastive pretraining like DINO/SimCLR), active learning, weak labels, and simulation-driven pretraining.

  • Hands-on experience with data curation for ML: building datasets from messy, real-world sources, helping to define ground truth, and managing labeling or simulation pipelines (MONAI, ITK / SimpleITK, 3D Slicer).

  • Experience with segmentation models for ultrasound imaging, whether on synthetic or real images

  • ML for imaging or inverse problems in physics-based domains (CT, MRI, ultrasound, or adjacent), and comfort working alongside reconstruction/signal-processing teams.

  • Deploying models in versioned, auditable, high-stakes settings.

  • A background in anatomy, medical imaging, or body composition and prior work with existing segmentation models is a plus.

Skills Required

  • Strong applied machine learning experience developing, architecting, training, and evaluating models from scratch
  • Experience with image segmentation, including semantic or instance segmentation in 2D and ideally 3D or volumetric data
  • Ability to move between research iteration and producing quantifiable, testable models
  • Fluency with modern deep-learning tooling such as PyTorch and current development practices
  • Experience working under design controls with model documentation and verification requirements
  • Experience with modern segmentation architectures and label generation, including U-Net, nnU-Net, 3D U-Net, transformer-based, or promptable segmentation
  • Experience with self-supervised or semi-supervised learning, active learning, weak labels, or simulation-driven pretraining
  • Hands-on ML data curation, ground-truth definition, labeling pipelines, or simulation pipelines using tools such as MONAI, ITK, SimpleITK, or 3D Slicer
  • Experience with segmentation models for ultrasound imaging
  • Experience with medical imaging or physics-based inverse problems involving CT, MRI, ultrasound, or related domains
  • Experience deploying models in versioned, auditable, high-stakes settings
  • Background in anatomy, medical imaging, body composition, or existing segmentation models
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The Company
HQ: San Francisco, California

What We Do

Midjourney is an independent research lab exploring new mediums of thought and expanding the imaginative powers of the human species.

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