Bioprocess Data Engineer

Posted 7 Hours Ago
Be an Early Applicant
Lisbon, PRT
In-Office
Entry level
Biotech
The Role
Build the digital infrastructure for fermentation and bioprocess operations by standardizing process data, integrating sensors and equipment, developing Python and SQL pipelines, dashboards, automated reporting, and supporting digital twins, kinetic models, and process simulations. The role bridges bioprocess engineering, instrumentation, automation, and data engineering while helping define scalable digitalization strategies.
Summary Generated by Built In

At MicroHarvest, we’re reinventing how the world produces protein — fast, sustainably, and at scale. By harnessing the power of microorganisms, we create nutritious proteins that can be made anywhere, helping solve one of humanity’s biggest challenges: feeding a growing world sustainably.

We’re now looking for a Bioprocess Data Engineer to connect the dots between biotechnology, engineering, and data — and help us build the digital backbone of our fermentation processes.

In this hands-on role, you’ll turn complex process data into meaningful insights, connect equipment and systems, and develop smart solutions that make our operations more efficient, reliable, and scalable. From solving everyday data challenges to shaping our long-term digitalization strategy, you'll play a key role in bringing our bioprocesses into the digital future.

What you’ll be doing:

  • Connect the dots: Structure and standardize process data across our pilot plant, I&D activities, and other locations — creating a reliable foundation for data-driven decisions.
  • Make data flow: Connect equipment, sensors, and systems (such as bioreactors, scales, and gas analyzers) to enable reliable, real-time data collection and integration.
  • Turn data into insights: Develop automated calculations, reporting tools, data pipelines, and dashboards using Python, SQL, Power BI, or similar tools.
  • Build smarter processes: Bridge the gap between bioprocess engineering, instrumentation, data engineering, and automation to improve how we capture, manage, and use process data.
  • Shape our digital future: Help develop our long-term digitalization and automation roadmap, using our pilot plant as a testing ground for solutions that can scale to future industrial operations.
  • Bring processes to life digitally: Work towards developing digital twin capabilities, kinetic models, and process simulations to improve fermentation process understanding, optimization, and scale-up.
  • Collaborate across disciplines: Work closely with engineers, scientists, equipment vendors, and internal teams to define integration requirements and build practical, scalable solutions.

What you bring:

  • A degree in Electrical Engineering, Mechanical Engineering, Data Engineering, Chemical Engineering, Bioprocess Engineering, or a related field.
  • Strong programming skills, particularly in Python and SQL, with experience in data processing, automation, and reporting.
  • Experience with version-controlled development using GitHub.
  • Understanding of industrial sensors, instrumentation, communication protocols (such as OPC UA and Modbus), and equipment integration.
  • Familiarity with dashboard development, data visualization, and user-friendly interfaces.
  • A structured, proactive mindset and the ability to turn complex technical challenges into practical solutions.
  • Strong communication skills and the ability to connect people and ideas across engineering, biology, and data.
  • A hands-on attitude — you're just as comfortable working with hardware on-site as you are writing code.
  • Curiosity, adaptability, and the motivation to build solutions in a fast-moving, evolving environment.

Bonus points for:

  • Hands-on experience in an industrial or pilot-scale bioprocess environment.
  • Knowledge of bioprocess calculations, fermentation processes, and process performance indicators.
  • Familiarity with digital twin concepts, kinetic modelling, or process simulation tools.
  • Experience using AI tools to accelerate development and improve workflows.
  • Experience working in startups or scale-ups, where building systems from scratch is part of the adventure.

At MicroHarvest, you’ll be part of a fast-moving team where bold science meets hands-on action and real results. We offer:

  • A high-impact role in a purpose-driven company changing the future of food.
  • A collaborative, international team that celebrates curiosity and learning.
  • Freedom to shape digital tools, processes, and systems — and see your solutions make a real difference.
  • The opportunity to work at the intersection of biotechnology, engineering, and digital innovation, helping shape how we scale our technology.

Here, your work doesn't just connect data. It connects science, technology, and the future of sustainable food production.

Ready to turn data into impact? Send us your CV — we'd love to meet you.

At MicroHarvest, we value diversity and as such we do not discriminate based on race, colour, religion, sex, sexual orientation, gender identity or expression, national origin, age, disability, veteran status, marital status, or based on an individual’s status in any group or class protected by applicable laws. MicroHarvest respectfully encourages people from all backgrounds and under-represented groups to apply for this position.


Skills Required

  • Degree in Electrical Engineering, Mechanical Engineering, Data Engineering, Chemical Engineering, Bioprocess Engineering, or a related field
  • Strong programming skills in Python and SQL, including data processing, automation, and reporting
  • Experience with version-controlled development using GitHub
  • Understanding of industrial sensors, instrumentation, communication protocols such as OPC UA and Modbus, and equipment integration
  • Familiarity with dashboard development, data visualization, and user-friendly interfaces
  • Hands-on experience in an industrial or pilot-scale bioprocess environment
  • Knowledge of bioprocess calculations, fermentation processes, and process performance indicators
  • Familiarity with digital twin concepts, kinetic modelling, or process simulation tools
  • Experience using AI tools to accelerate development and improve workflows
  • Experience working in startups or scale-ups
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The Company
HQ: Hamburg
39 Employees
Year Founded: 2021

What We Do

MicroHarvest Delivers Better Protein: Sustainable. Nutritious. Scalable. Protein is essential for a healthy diet, but with global demand expected to increase 50% by 2050, current sourcing methods are already harming the planet and often fail to provide truly nutritious food. At MicroHarvest, we are pioneering better protein production through natural fermentation. We produce high-quality protein in just 24 hours—faster than any other method. Like brewing beer or making yogurt, we use microorganisms, nature’s most efficient protein factories, to create tasty, healthy, and sustainable protein at scale. Independent of soil quality or climate, our process runs 24/7 anywhere in the world, requiring only a fraction of the water and land while cutting CO₂ emissions by over 95%. MicroHarvest is addressing today’s demand for highly nutritious food while building a resilient food system for the future. Together, we are HUNGRY FOR THE BETTER. 🚀 Hamburg & Lisbon Join us, we are hiring!

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