Associate Scientist / Scientist I, Computational Test Development

Posted 5 Days Ago
Be an Early Applicant
Boston, MA, USA
Hybrid
110K-150K Annually
Mid level
Biotech
The Role
Execute computational analyses supporting epigenomic and NGS-based diagnostic assay characterization and validation. Build quality assessment frameworks, define QC thresholds, run in silico simulations, analyze assay performance, and support limit-of-detection studies. Document code, methods, and results for regulatory submissions and design controls. Collaborate with wet-lab and computational scientists, contribute to SOPs and validation reports, and communicate findings in cross-functional settings.
Summary Generated by Built In

The Opportunity 

We are seeking a motivated and detail-oriented Associate Scientist / Scientist I to join our Computational Test Development team at Precede Biosciences. Reporting to our Senior Director, Computational Test Development, this role is focused on the execution and analysis that underpins our diagnostic assay characterization and validation programs. 

This is a hands-on computational role. You will run analyses, build and maintain quality assessment frameworks, execute in silico simulations, and generate the data-driven outputs that feed directly into our regulatory submissions. If you are energized by rigorous data analysis, take pride in clean and reproducible work, and are excited to contribute to diagnostics that could change how cancer is detected and treated, we want to hear from you. 

About Us 

We are pioneering an advanced, minimally invasive, comprehensive epigenomics platform with the potential to profoundly impact the research and development of new medicines and the use of approved medicines in clinical practice across a number of conditions, including cancer. More information on our company and platform can be found on our company website and in our seminal publication in Nature Medicine. 

We care deeply about creating a place where folks can do their best work from the start and have intentionally created an environment that is defined by purpose, teamwork, and excellence. This means nurturing team spirit, facing challenges together, and collaboratively solving complex problems, while also ensuring a strong focus on individual initiative, accountability, and delivery. 

What You'll Do

    Assay Characterization & Validation 

    • Execute data analyses supporting assay characterization across multiple epigenomic and NGS-based diagnostic tests — from raw data processing through performance metric generation 

    • Design and implement quality assessment frameworks to evaluate assay and pipeline performance, including QC metric definition, threshold setting, and failure mode identification 

    • Run and interpret validation experiments in close coordination with wet lab and senior computational team members, contributing to study execution against pre-defined protocols 

    • Pursue defined research questions semi-independently — taking a scoped problem, designing the analytical approach, executing, and returning well-documented results 

    In Silico Simulation & Thresholding 

    • Design and run in silico simulations to model assay behavior under variable conditions — including signal dropout, coverage non-uniformity, and input DNA variability 

    • Develop and apply statistical approaches to threshold setting and performance boundary definition, supporting limit of detection and analytical range characterization 

    • Systematically explore parameter sensitivity across bioinformatics pipelines to assess model robustness and inform feature selection 

    Regulatory Support & Communication 

    • Produce clear, thorough documentation of all analyses code, methods, results, and interpretation to the standard required under design controls 

    • Contribute to the authoring of SOPs and analytical summary reports  

    • Partner closely with wet lab scientists to ensure computational analyses are grounded in experimental reality and that results are communicated in accessible, actionable terms 

    • Present analytical findings clearly in team meetings and cross-functional settings  

    • Contribute to a collaborative team environment by sharing code and knowledge openly and proactively 

Who You Are

    • MSc in computational biology, bioinformatics, biostatistics, or a closely related quantitative field with 3–4 years of industry or post-graduate research experience in a data-intensive biological or biomedical setting, Ph.D. preferred 

    • Strong proficiency in R and Python for data analysis, visualization, and reproducible reporting — you write, own, and document your own code 

    • Experience with cloud computing environments (AWS) for running scalable analyses  

    • Demonstrated ability to execute analytical plans with precision and efficiency, managing multiple tasks without a drop in quality or documentation standards 

    • Familiarity with NGS data types and standard processing pipelines — alignment, QC, coverage analysis, or equivalent 

    • Clear and organized communicator — written documentation, results presentations, and cross-functional interactions alike 

    • Comfortable working in a fast-paced startup environment, following defined protocols while contributing ideas for improvement 

    Nice to have: 

    • Exposure to regulated environments — CLIA, CAP, FDA IVD, or design controls in any form 

    • Experience with epigenomic data types — methylation, cfDNA, chromatin accessibility, or ChIP-seq 

    • Familiarity with statistical thresholding or limit of detection frameworks for diagnostic applications 

    • Experience contributing to SOPs, validation reports, or other regulated documentation 

Skills Required

  • MSc in computational biology, bioinformatics, biostatistics, or a closely related quantitative field
  • 3-4 years of industry or postgraduate research experience in a data-intensive biological or biomedical setting
  • Strong proficiency in R for data analysis, visualization, and reproducible reporting
  • Strong proficiency in Python for data analysis, visualization, and reproducible reporting
  • Experience with AWS cloud computing environments for scalable analyses
  • Ability to execute analytical plans precisely and efficiently while managing multiple tasks
  • Familiarity with NGS data types and standard processing pipelines, including alignment, QC, or coverage analysis
  • Clear written and verbal communication skills
  • Ability to work in a fast-paced startup environment and follow defined protocols
  • PhD in a relevant field
  • Exposure to regulated environments such as CLIA, CAP, FDA IVD, or design controls
  • Experience with epigenomic data types such as methylation, cfDNA, chromatin accessibility, or ChIP-seq
  • Familiarity with statistical thresholding or limit-of-detection frameworks for diagnostics
  • Experience contributing to SOPs, validation reports, or other regulated documentation
Am I A Good Fit?
beta
Get Personalized Job Insights.
Our AI-powered fit analysis compares your resume with a job listing so you know if your skills & experience align.

The Company
HQ: Boston, MA
51 Employees
Year Founded: 2021

What We Do

We've experienced the significant gaps in our collective ability, as a medical and research community, to access and understand disease-defining biology when it matters most. To address this, we've developed a simple blood test to uncover actionable disease-defining transcriptional biology. Our unique genome-wide platform profiles circulating chromatin and the DNA methylome to deliver resolution into the dynamic activity of individual genes and pathways in diseased tissues from just 1mL of plasma. By partnering with developers of new medicines and advancing our own diagnostic tests, we’re working towards a world where new medicine development efforts succeed more frequently, and where anyone can receive a minimally invasive diagnosis and treatment that’s precise to the biology of their disease.

Similar Jobs

Altana Logo Altana

Senior Director, Platform Engineering

Artificial Intelligence • Machine Learning • Software
Easy Apply
Hybrid
4 Locations
228 Employees
295K-345K Annually

CrowdStrike Logo CrowdStrike

Business Systems Analyst

Cloud • Computer Vision • Information Technology • Sales • Security • Cybersecurity
Remote or Hybrid
USA
11000 Employees
125K-180K Annually

CrowdStrike Logo CrowdStrike

Systems Engineer

Cloud • Computer Vision • Information Technology • Sales • Security • Cybersecurity
Remote or Hybrid
USA
11000 Employees
140K-215K Annually

CrowdStrike Logo CrowdStrike

Development Engineer

Cloud • Computer Vision • Information Technology • Sales • Security • Cybersecurity
Remote or Hybrid
USA
11000 Employees
85K-120K Annually

Similar Companies Hiring

Formation Bio Thumbnail
Artificial Intelligence • Big Data • Healthtech • Biotech • Pharmaceutical
New York, NY
150 Employees
SOPHiA GENETICS Thumbnail
Software • Healthtech • Biotech • Big Data • Artificial Intelligence
Boston, MA
450 Employees
Pfizer Thumbnail
Artificial Intelligence • Healthtech • Machine Learning • Natural Language Processing • Biotech • Pharmaceutical
New York, NY
121990 Employees

Sign up now Access later

Create Free Account

Please log in or sign up to report this job.

Create Free Account