Research Scientist Intern, AI Molecular Design

Posted Yesterday
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Palo Alto, CA, USA
In-Office
Internship
Artificial Intelligence • Software
The Role
Conduct AI research for molecular and biological design within GenBio AI’s Virtual Cell World Model. Develop, implement, and debug deep learning models using frameworks such as JAX, TensorFlow, or PyTorch, with potential applications in generative modeling, graph neural networks, protein structure prediction, molecular design, and distributed training. Collaborate across AI and biology while operating independently in an interdisciplinary startup environment.
Summary Generated by Built In
GenBio AI is an AI for Science company on a mission to make biology fully computable. We are building AIDO (AI-Driven Digital Organism) to simulate living systems, decode biology holistically, and accelerate medical and scientific research. Our first step toward that mission is AIDO Cell, the first virtual cell world model that holistically simulates cell biology from molecules up to whole-cell behavior. It enables researchers to run experiments virtually, predicting how cells respond to genetic changes, drugs and other interventions before going into the lab. It is supported by AIDO Foundry, an AI-builds-AI engineering framework for automating virtual cell development, and AIDO Lab, an interface to digitally run experiments and observe the results. Together they form the foundation for a new paradigm in AI-driven drug discovery, bioengineering, and fundamental biomedical research.

Qualifications:

  • M.S. or Ph.D. student (or evidence of equivalent level of expertise) in Computer Science, Artificial Intelligence, Machine Learning, or a related technical field.

  • Available for a 6-month, in-person internship in Palo Alto, CA, and authorized to work in the U.S. for the duration of the internship.
  • Skilled in developing, implementing, and debugging deep learning methods/models in popular frameworks, such as JAX, TensorFlow, or PyTorch, with an interest in generative models, graph neural networks, or large-scale deep learning applications.

  • Strong theoretical foundation (e.g., statistics, optimization, graph theory, linear algebra).

  • Passion for interdisciplinary research (emphasizing the intersection of AI and Biology), and willingness to acquire necessary domain knowledge.

  • Motivated and self-driven with the ability to operate with partial descriptions of high-level objectives (as is typical in a start-up environment).

  • Familiarity with software engineering best practices (version control, documentation, etc).

Nice to Have:

  • 3 year PhD student and above.

  • Proven track record in research and innovation demonstrated through contributions in top-tier AI/ML (e.g., NeurIPS, ICML, CVPR, ECCV, ICCV, ICLR) and/or core biology (e.g., Nature, Science, or Cell) journals and conferences.

  • Intern experience in industry (e.g., OpenAI, FAIR, Deepmind, Google Research).

  • Hands-on experience working at the intersection of AI and Biology, particularly protein structure prediction, protein sequence/structure modeling, or molecular design.

  • Experience with biological structure prediction algorithms or models such as AlphaFold2/3 or RoseTTAFold.

  • Experience in generative modeling for biological structures and sequences, including diffusion models, flow matching, or related approaches.

  • Experience in large-scale distributed training and inference.

  • Open-source contributions, especially if used by others.

Join us as we embark on this journey to redefine the future of biology and medicine.
We are an equal opportunity employer. We celebrate diversity and are committed to creating an inclusive environment for all employees. GenBio AI participates in the U.S. Department of Homeland Security’s E-Verify program to confirm the employment eligibility of all newly hired employees. For more information on E-Verify, please visit www.e-verify.gov.

Skills Required

  • Current M.S. or Ph.D. student, or equivalent expertise, in Computer Science, Artificial Intelligence, Machine Learning, or a related technical field
  • Availability for a six-month, in-person internship in Palo Alto, California
  • Authorization to work in the United States for the duration of the internship
  • Experience developing, implementing, and debugging deep learning models
  • Proficiency with JAX, TensorFlow, or PyTorch
  • Strong foundation in statistics, optimization, graph theory, or linear algebra
  • Interest in interdisciplinary AI and biology research
  • Ability to work independently with partially defined objectives
  • Familiarity with software engineering best practices, including version control and documentation
  • At least three years of Ph.D. study
  • Research contributions to top-tier AI/ML or core biology journals and conferences
  • Prior industry research or internship experience
  • Experience at the intersection of AI and biology, including protein structure prediction, protein modeling, or molecular design
  • Experience with AlphaFold2, AlphaFold3, RoseTTAFold, or similar biological structure prediction models
  • Experience with diffusion models, flow matching, or related generative modeling approaches
  • Experience with large-scale distributed training and inference
  • Open-source contributions used by others
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The Company
HQ: San Diego, CA
29 Employees
Year Founded: 2024

What We Do

GenBio.AI, Inc. (GenBio AI) is an innovative global startup dedicated to developing the world's first AI-driven Digital Organism, an integrated system of multiscale foundation models for predicting, simulating, and programming biology at all levels. Our goal is to achieve comprehensive, actionable empirical understandings of the mechanisms underlying all organismal physiologies and diseases. This will pave the way for a new paradigm in drug design, bio-engineering, personalized medicine, and fundamental biomedical research, all powered by Generative Biology. Our founding team consists of world-renowned scientists and researchers in AI and Biology from prestigious institutions such as CMU, MBZUAI, WIS, alongside prominent financial investors. GenBio AI, a true global effort from day one, is establishing offices in Palo Alto, Paris, and Abu Dhabi.

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